Reference II Admixture Analysis K=15

Continuing with Reference II admixture analysis, here is the results spreadsheet.

You can click on the legend to the right of the bar chart to sort by different ancestral components.

If you can't see the interactive chart above, here's a static image.

C1 South Asian C2 Balochistan/Caucasus
C3 Kalash C4 Southwest Asian
C5 European C6 Southeast Asian
C7 Chinese C8 Polynesian
C9 Siberian C10 Papuan
C11 Japanese C12 Eastern Bantu
C13 Bushman C14 East African
C15 West African

Fst divergences dendrogram between estimated ancestral populations for K=15:

PS. This was run using Admixture version 1.04 so I can make an apples-to-apples comparison with the previous runs.

6 Comments.

  1. Zack could you please post the FST numbers?

    • C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 C11 C12
      C2 0.099
      C3 0.088 0.071
      C4 0.099 0.076 0.091
      C5 0.096 0.062 0.080 0.049
      C6 0.098 0.142 0.140 0.151 0.141
      C7 0.099 0.142 0.138 0.151 0.141 0.036
      C8 0.130 0.173 0.170 0.180 0.171 0.079 0.077
      C9 0.103 0.134 0.135 0.146 0.132 0.076 0.048 0.113
      C10 0.187 0.234 0.232 0.238 0.232 0.208 0.211 0.196 0.220
      C11 0.096 0.139 0.136 0.148 0.138 0.044 0.016 0.082 0.042 0.208
      C12 0.172 0.182 0.194 0.173 0.185 0.207 0.210 0.235 0.212 0.285 0.208
      C13 0.241 0.250 0.263 0.240 0.250 0.276 0.280 0.306 0.280 0.356 0.277 0.092
      C14 0.131 0.132 0.147 0.116 0.131 0.169 0.170 0.197 0.170 0.248 0.168 0.049
      C15 0.174 0.184 0.196 0.174 0.186 0.209 0.212 0.237 0.214 0.287 0.210 0.019
      C13 C14
      C2
      C3
      C4
      C5
      C6
      C7
      C8
      C9
      C10
      C11
      C12
      C13
      C14 0.119
      C15 0.095 0.051

  2. Thank you zack, but could you just post FST numbers instead of dendograms?

    It is much more informative to just see the numbers?

    • Sure, I'll post the numbers too. I was actually posting them until the table width got too wide for the site layout. But I can split them up.

  3. Exelent, good job by the way.

Trackbacks and Pingbacks: