Admixture K=4, HRP0051-HRP0060

Posted by on March 21, 2011

Here are their ethnic backgrounds and the results spreadsheet. Also relevant are the reference I admixture results.

The interesting samples here are the Gujaratis and the Kurd.

If you can't see the interactive bar chart above, here's a static image.

PS. This was run using Admixture version 1.04.

Admixture,

4 Comments.

  1. Simranjits March 21, 2011 at 7:30 am

    Zack , i noticed in your spreadsheet , data for 1-60 is available up to k=12 already? Is this ready already? i want to incorporate it. The k=5 might be interesting to see as well.

    • Zack March 21, 2011 at 8:43 am

      I'll likely finish up the graphs etc during lunchtime and post it early afternoon.

      I run only K=4, 9, 12 for the Harappa participants. If you need K=5, I'll have to run it on all batches (except first).

  2. Paul G March 21, 2011 at 12:39 pm

    Thanks for the update, Zack.

    If anyone is interested, I created a simple Euclidean distance matrix based on the K12 admixture values for HRP0001-0060. The ordinary caveats regarding Euclidean distance type measures apply. To sort an individual's matches, simply click on the drop-down menu at the very top of the column.

    https://spreadsheets.google.com/ccc?key=0AksEb_ijCNKYdE1jQWZBUU5RYmdOcEhfNFg3Ump1OGc&hl=en&authkey=CKyGw5EG

    My top 15 matches (EUC):
    1 Iraqi/Egyptian Jewish 0.0933
    2 Iraqi Arab (Baghdad) 0.0997
    3 Iraqi Kurd 0.1275
    4 IranianHRP0030 0.1308
    5 IranianHRP0018 0.1572
    6 IranianHRP0046 0.1626
    7 IranianHRP0020 0.1633
    8 IranianHRP0040 0.1664
    9 Iraqi Arab (South) 0.2420
    10 Iranian Khorasani 0.2438
    11 Punjabi (3/4), Egyptian (1/4) 0.4467
    12 Romani (1/2), Serb (1/2) 0.4833
    13 Punjabi (3/4), Egyptian (1/4) 0.4844
    14 Sindhi (1/2), Balochi (1/2) 0.5219
    15 Kashmiri 0.5731